No, it won't damage those games.
Contrary to popular beleif, Missingno does not crash your game is save file. The only thing it permanately damages are you Hall of Fame entries, which you can play the game without. So the crashing issue is unrelated to Missingno and must've been caused by something else.
So you can trade those Pokemon to your other games without worrying about the effect Missingno has on them, because outside of glitching the Hall of Fame, Missingno is harmless.