Finally went through the whole list here and found it out:
(Using the tradmarked Japanese names)
Kanto
- Caterpie
- Butterfree
- Pigeot*
- Pikachu
- Nidoran M and F
- Nidorina
- Nidorino
- Nidoking
- Nidoqueen
- Zubat
- Golbat
- Paras
- Parasect
- Dugtrio
- Persian
- Golduck
- Mankey
- Ponyta
- Dodo*
- Gangar*
- Starmie
- Gyarados
- Omnite*
- Omstar*
- Kabuto
- Kabutops
- Mew
- Mewtwo
Johto
- Bayleef*
- Meganium
- Ariados
- Crobat
- Lantern*
- Pichu
- Togepy*
- Gliger*
- Delibird
- Kingdra
- Porygon 2
- Elekid
- Miltank
- Entei
- Raikou
- Suicune
- Lugia
- Celebi
Hoenn
- Ralts
- Kirlia
- Nosepass
- Minun
- Illumise
- Roselia
- Vibrava
- Frygon*
- Solrock
- Tropius
- Absol
- Huntail
- Metang
- Metagross
- Regi's
- Lati@s
- Groudon
- Rayquaza
- Jirachi
- Deoxys
Sinnoh
- Luxio
- Chrrim
- Skutank*
- Gabite
- Riolu
- Lucario
- Hippopotas
- Togekiss
- Porygon Z
- Rotom
- Palkia
- Dialga
- Regigigas
- Heatran
- Giratina
- Manaphy
- Phione
- Darkrai
- Shaymin
- Arceus
Unova
- Victini
- Munna
- Musharna
- Darumakka*
- Zorua
- Zoroark
- Swanna
- Emonga*
- Terrakion
- Virizion
- Cobalon*
- Reshiram
- Zekrom
- Kyurem
- Genesec
- Meloetta
- Keldeo
*These are close