PokéBase - Pokémon Q&A
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Like in most recent games.

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A marking tool was introduced in the Generation III games. Prior to Pokémon Black 2 and White 2, markings could only be set within the Pokémon Storage System, but since then, it is also possible to do from the Pokémon's summary screen by simply tapping the icons on the touch screen.

No, Pokemon in R/B/Y cannot be marked, since the feature was added 2 generations later.
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