PokéBase - Pokémon Q&A
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Nope, the only one is the shiny Rayquaza Nobunaga battles you with in the final battle.
>In Pokémon Conquest, Nobunaga, the primary antagonist, uses a Shiny Rayquaza in a his final battle with the player. It is released after being defeated, but Nobunaga can later re-link with it after all special episodes have been cleared. -Bulbepedia

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