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Which Pokemon can only be caught in Heartgold? Soulsilver? Pearl?

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You mean version exclusive Pokemon, right?
How far do you want me to go back
Yeah.. version exclusive pokemon for pearl and soulsilver and heartgold..

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Version Exclusive to Diamond and Pearl:

Diamond

Seel
Dewgong
Scyther
Murkrow
Scizor
Larvitar
Pupitar
Tyranitar
Poochyena
Mightyena
Aron
Lairon
Aggron
Kecleon
Cranidos
Rampardos
Honchkrow
Stunky
Skuntank
Dialga

Pearl

Slowpoke
Slowbro
Pinsir
Slowking
Misdreavus
Houndour
Houndoom
Stantler
Spheal
Sealeo
Walrein
Bagon
Shelgon
Salamence
Sheildon
Bastiodon
Mismagius
Glameow
Purugly
Palkia

Version Exclusive to Heartgold and Soulsilver:

Heartgold

Mankey
Primeape
Growlithe
Arcanine
Spinarak
Ariados
Gligar
Mantine
Phanpy
Donphan
Sableye
Baltoy
Claydol
Kyogre
Mantyke
Gliscor

Soulsilver

Vulpix
Ninetales
Meowth
Persian
Ledyba
Ledian
Teddiursa
Ursaring
Delibird
Skarmory
Mawile
Gulpin
Swalot
Groudon

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