Meta Battle Subway PokeBase - Pokemon Q&A
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Version Exclusive Pokémon in Omega Ruby:

(Does not include Legendary Pokémon in the initial list, which is what you asked for.)

Kabuto (Fossil is only available in this game but Pokémon receivable if the fossil is traded over.)

Kabutops (Fossil is only available in this game but Pokémon receivable if the fossil is traded over.)

Seedot

Nuzleaf

Shiftry

Mawile

Zangoose

Solrock

Shieldon (Fossil is only available in this game but Pokémon receivable if the fossil is traded over.)

Bastiodon (Fossil is only available in this game but Pokémon receivable if the fossil is traded over.)

Throh

Archen (Fossil is only available in this game but Pokémon receivable if the fossil is traded over.)

Archeops (Fossil is only available in this game but Pokémon receivable if the fossil is traded over.)

Skrelp

Dragalge


Version Exclusive Pokémon in Alpha Sapphire:

(Does not include Legendary Pokémon in the initial list, which is what you asked for.)

Omanyte (Fossil is only available in this game but Pokémon receivable if the fossil is traded over.)

Omastar (Fossil is only available in this game but Pokémon receivable if the fossil is traded over.)

Lotad

Lombre

Ludicolo

Sableye

Seviper

Lunatone

Cranidos (Fossil is only available in this game but Pokémon receivable if the fossil is traded over.)

Rampardos (Fossil is only available in this game but Pokémon receivable if the fossil is traded over.)

Sawk

Tirtouga (Fossil is only available in this game but Pokémon receivable if the fossil is traded over.)

Carracosta (Fossil is only available in this game but Pokémon receivable if the fossil is traded over.)

Clauncher

Clawitzer


Version Exclusive Legendary Pokémon in Omega Ruby and Alpha Sapphire comparison:

Omega Ruby: Ho-Oh, Groudon, Palkia, Tornadus and Reshiram.

Alpha Sapphire: Lugia, Kyogre, Dialga, Thundurus and Zekrom.

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