PokéBase - Pokémon Q&A
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2 Answers

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Because inside the National Pokédex, you can acquire pokédex entries from all the regions.

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Because the Pokemon in that Pokedex can only be found in that region.

As for your edit, I don't know why the National Pokedex is called itself since National and Regional are synonyms. O_o What the creators mean is that Pokemon in the National Pokedex that can be found anywhere, really.

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