Never mind, I waited quite a while to get this question answered but no one had answered it, so I got bored and decided to find out for my self.
1st: Pokémon: The First Movie- $163,644,662
2nd: Pokémon: The Movie 2000- $133,949,270
3rd: Pokémon: Zoroark: Master of Illusions- $71,143,529
4th: Pokémon 3: The Movie- $68,411,275
5th: Pokémon the Movie: Black—Victini and Reshiram and White—Victini and Zekrom- $57,082,491
6th: Pokémon: Arceus and the Jewel of Life- $50,673,078
7th: Pokémon the Movie: Genesect and the Legend Awakened- $49,857,018.
8th: Pokémon the Movie: Kyurem vs. the Sword of Justice- $44,057,737
9th: Pokémon: Giratina and the Sky Warrior- $43,338,599
10th: Pokémon: The Rise of Darkrai $42,496,749
11th: Pokémon: Lucario and the Mystery of Mew- $37,150,760
12th: Pokémon: Destiny Deoxys- $34,337,258
13th: Pokémon: Jirachi Wish Maker- $33,393,751
14th: Pokémon 4Ever- $28,023,563
15th: Pokémon Ranger and the Temple of the Sea- $26,851,324
16th: Pokémon Heroes- $20,867,919
Source: Each movies Wikipedia page :P
