PokéBase - Pokémon Q&A
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This was hard to answer since some are on the line and iffy. Please let me know if I'm missing anyone or if you disagree! I tried to base this list based off of both mame and appearance.

  • Bulbasaur line
  • Charmander line
  • Gyarados
  • Aerodactyl
  • Dratini line
  • Meganium
  • Larvitar line
  • Lugia
  • Trapinch line
  • Tropius
  • Bagon line
  • Groudon
  • Rayquaza
  • Cranidos line
  • Shieldon line
  • Gible line
  • Dialga
  • Palkia
  • Giratina
  • Axew line
  • Druddigon
  • Deino line
  • Reshiram
  • Zekrom
  • Kyurem
  • Tyrunt line
  • Amaura line
  • Goodra line
  • Noivern
  • Yveltal
  • Drampa
  • Jangmo-o line
  • Dracozolt
  • Arctozolt
  • Arctovish
  • Dracovish
  • Duralon
  • Dreepy line
  • Eternatus (?)
  • Regidraco
  • Cyclizar
  • Iron Jugulis
  • Frigibax line
  • Miraidon
  • Koraidon
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  • Bulbasaur
  • Ivysaur
  • Venusaur
  • Charmander
  • Charmeleon
  • Charizard
  • Dratini
  • Dragonair
  • Dragonite
  • Gyarados
  • Chikorita
  • Bayleef
  • Meganium
  • Larvitar
  • Pupitar
  • Tyranitar
  • Lugia
  • Aron
  • Lairon
  • Aggron
  • Tropius
  • Bagon
  • Shelgon
  • Salamence
  • Lati@s
  • Groudon
  • Rayquaza
  • Cranidos
  • Rampardos
  • Shieldon
  • Bastiodon
  • Gible
  • Gabite
  • Garchomp
  • Dialga
  • Palkia
  • Giratina
  • Axew
  • Fraxure
  • Haxorus
  • Druddigon
  • Deino
  • Zweilous
  • Hydreigon
  • Reshiram
  • Zekrom
  • Kyurem
  • Tyrunt
  • Tyrantrum
  • Amaura
  • Aurorus
  • Goodra
  • Noivern
  • Yveltal

Pterosaurs and underwater reptiles who lived during the period of dinosaurs are NOT classified as dinosaurs.

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It's ok Aerodactyl, I still love you.
Drampa, Jangmo-o, Hakamo-o, Kommo-o
not so sure about Turtonatar
Aerodactly is also based off of a dragon. Ask lance.