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Has anyone tried using the clone glitch in Generation 3 to clone some shinies and transfer a lot of em to Generation 7?

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If you transfer a cloned gen 2/3 Pokémon, it will appear in Gen 7 normally with nothing suspicious whatsoever.

Source: Experience

EDIT: If the cloned Pokémon was shiny, then it will appear shiny in SM/USUM

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Will it still be shiny?
Yes and no, shiny rate is way different the forcing a shiny, so it we be incredibly rare for a shiny to occur. If the above answer doesn't officiate what your asking, you don't have to select it and could edit your answer to be clear that you want to know this in order to clone shiny Pokemon. Hope I helped.