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So, It's not shiny or regular, but it has light blue horns, and a mostly black and blue body. What is the reason for this?

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Also, in online battles it changes to the regular colors.

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The form you're describing is known as Neutral Mode, and appears when Xerneas isn't in a battle or Contest. This form difference is purely visual and has no effect on gameplay. The developers probably did this to make Xerneas look stronger when it reawakened.

Xerneas (Bulbapedia)

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Pokémon X and Y had problems with colour saturarion. This sometimes caused some Pokémon to have slight differences in color in these games then their normal models.

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Actually, Xerneas has two modes, Active and Neutral. Its Neutral mode has light blue horns as opposed to Active mode's rainbow horns. Active mode only shows when in a battle.
I know about it's battle form, but it changed it's shade of blue when we were battling because X and Y has weird colouring.
I mean maybe it did look off while battling, but that doesn't answer the question. Asker states that this palette is much more than just a colour getting shifted a few degrees. Happily, their description exactly fits Neutral Mode.
Both answers work I guess