Meta Rate My Team PokéBase - Pokémon Q&A
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This should explain which Pokemon in the Anime are Shiny, and which ones are also alternativly coloured.
In short:
> Noctowl, Shuckle, Red Gyarados (Red = shiny), Magneton, Swellow, Magikarp, Donphan, Dustox, Metagross, Ditto, Entei, Raikou, Suicune, Ariados, Hydreigon, Golurk, Onix.

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Bulbapedia has a page for practically anything XD
why some pokemon are different coloured in the anime ?can in catch them in the games?
The Anime isn't the game, for the record. You can't get the alternative coloured Pokemon in-game, just the Anime was written this way to make it more entertaining.