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Once the player has gone into space with Mega Rayquaza, destroyed the meteoroid and battled Deoxys, Zinnia disappears from the Sky Pillar. She leaves behind a note with Aster thanking the player for their help. Later at Meteor Falls, her grandmother tells her that she should find her own purpose in life now that she is freed from her lifelong duty. She agrees and leaves her Salamencite with the player before departing. Zinnia's whereabouts after this point are unknown.

In short,NO

Source:Bulbapedia

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