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Title says it all.

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before i answer, you mean pokémon like:
sawk and throh
zacian and zamazenta
plusle and minun
things like that?
This is kind of an opinion question because there's no official definition of "counterpart". Some people think Numel's counterpart is Carvanha, and some people think it's Spoink.

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Best answer

Generation I

Caterpie line and Weedle line
Sandshrew line and Ekans line
Alolan Sandshrew line and Alolan Vulpix line
Nidoran F line and Nidoran M line
Vulpix line and Growlithe line
Oddish line and Bellsprout line
Meowth line and Mankey line
Magnemite line and Voltorb line
Hitmonlee and Hitmonchan
Shellder line and Staryu line
Scyther and Pinsir
Electabuzz and Magmar
Omanyte line and Kabuto line

Generation II

Ledyba line and Spinarak line
Espeon and umbreon
Misdreavus line and Murkrow line
Gligar line and Sneasel line
Teddiursa line and Phanpy line
Mantine and Skarmory
Lugia and Ho-oh

Generation III

Poochyena line and Zigzagoon line
Beautifly and Dustox
Lotad line and Seedot line
Taillow line and Wingull line
Sableye and Mawile
Plusle and Minun
Volbeat and Illumise
Carvanha line and Numel line
Zangoose and Seviper
Lunatone and Solrock
Lileep line and Anorith line
Shuppet line and Duskull line
Latias and Latios
Kyogre and Groudon

Generation IV

Cranidos line and Shieldon line
Glameow line and Stunky line
Leafeon and Glaceon
Dialga and Palkia
Cresselia and Darkrai

Generation V

Throh and Sawk
Cottonee line and Petilil line
Tirtouga line and Archen line
Gothita line and Solosis line
Karrablast line and Shelmet line
Rufflet line and Vullaby line
Heatmor and Durant
Tornadus and Thundurus
Zekrom and Reshiram

Generation VI

Spritzee line and Swirlix line
Skrelp line and Clawitzer line
Tyrunt line and Amaura line
Xerneas and Yveltal

Generation VII

Oranguru and Passimian
Turtonator and Drampa
Solgaleo and Lunala
Buzzwole and Pheromosa
Celesteela and Kartana
Stakataka and Blacephalon

Generation VIII

Flapple and Appletun
Hattena and Impidimp
Cursola and Sirfetch'd
Stonjourner and Eiscue
Zacian and Zamazenta

Cross-generational

Alolan Rattata line and Yungoos line
Paras and Morelull
Magikarp and Feebas
Pinsir and Heracross
Tauros and Miltank
Houndour and Electrike
Surskit and Dewpider

Source

Hope I helped!

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Thanks!
You're welcome!