Assuming you mean Champions Reg M-A or B VGC; these are both viable options to beat Charizard Y, speaking as someone who used it for the entirety of Season M-1 and 2.
Mega Tyranitar Sandstorm teams set up Sandstorm both when Ttar switches in and again when it Mega Evolves, making it almost impossible to gain weather control from them, and then Sand Rush Excadrill or +50% SpD Ttar OHKO with Rock Slide.
Choice Scarf Kleavor can unexpectedly outspeed and either OHKO or set up Stealth Rocks which then take 50% of Charizard's health with Stone Axe.
Aerodactyl, Garchomp, and Sneasler all outspeed and OHKO with Rock Slide.
Rain teams including mons such as Pelliper, Archaludon, Basculeigon, Mega Dragonite (and Mega Swampert in M-B) turn off Charizard's sun, wall Heat Wave with Wide Guard, and can 1/2-shot with any combination of Electro Shot, Weather Ball, Wave Crash, 2 stacks of Last Respects or Thunder.
Not a complete list, just wanted to mention a few things