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i have two poliwags and they're both leveel 40 but one has 94 hp and the other has 88 hp

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This is either because of EVs (If you have trained them by level up) and/or IVs (If you caught them at that level). EVs and IVs are rather complicated try looking at the following pages for info on them.

EVs: http://pokemondb.net/ev and http://bulbapedia.bulbagarden.net/wiki/Effort_values
IVs: http://pokemondb.net/mechanics/hidden and http://bulbapedia.bulbagarden.net/wiki/Individual_values

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