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If you faint zygarde, what happens?

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in X I fainted zygarde because I had no false swipe Pokemon and I used the master ball on xerneas. I want zygarde for my team

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beat the elite four and come back. he will then reapear.

hope I helped!
source: I managed to kill yveltal

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But Zygarde isn't there before you defeat the Elite Four...
No, but you can challenge E4 multiple times ;)
oh, I'mma go back and defeat them again!
Making Yveltal or Xerneas faint will make them reappear.