PokéBase - Pokémon Q&A
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I defeated Cobalion by accident after discovering him in Alpha Sapphire and really wanted him.

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1 Answer

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Like always, if you make a Legendary Pokemon faint you can always beat the Elite Four again and he will be there to try and capture again.

Hope I helped. :)

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What if you killed him before you even beat the E4? Still the same?