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In the game Pokémon Shuffle, whenever you battle a Mega Pokémon, its Trainer appears as a silhouette. Is it ever revealed who these Trainers are, and who are they? The one who commands Mega Sableye has a bandanna and sort of resembles Team Aqua Leader Archie…

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'proof that there is no proof' thanks, i just found my QOTM (quote of the month) for March
Man, this hasn't been answered for a long time.
Do you really need this answered?
Haven't you found the answer?
Umm, no, I haven't? If I had then I would hide the question/answer it myself.
In ORAS some girl gives you an intriguing stone. Ended up  going to Devon Corp. to  find out it's a pidgeotite.
Wrong game, buddy xD

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To be honest no one really knows. I'd say their silhouettes are of certain trainer designs (ie; fairy girl, bug catcher, so on) or designs remixed from prominent characters in the games. However, I doubt we'll ever know who they are.

Source: None other than logic due to the lack of sources available for shuffle other than theories much like my own

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I love logical answers :D
I do too. Logic is the Game Of The Year hands-down.