Somewhat, Filter does indeed affect the premade super-effectiveness of an attack by lowering the damage taken, but this affect doesn't affect resistances or neutral damage taken. This is because the ability Filter weakens the effects of super-effective hits by 25%, not neutral or not very effective moves, so if Mega Aggron's ability was suppressed or changed to something other than Filter, its weakness to Fire type attacks would be ×2 instead of ×1½, but it would still have a ×½ resistance to Fairy type moves.
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