PokéBase - Pokémon Q&A
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pretty much self explanatory.

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Pokémon, generally Legendaries, are shiny-locked primarily to reserve inherent value behind them to then use in distributions and events. When a Pokémon can't be obtained as a shiny through regular means, it gives that Pokémon the opportunity to be a shiny in an event tied to a promotion, or a later game with a new method of encountering them (Reshiram/Zekrom in ORAS or Solgaleo/Lunala in the SwSh DLC). There's no denying there's a community that this appeals to, acting as a selling factor for them. For instance, though it still would've been successful, I'm sure not as many players would participate in the Shiny Treasures of Ruin Raids, or as many people would care for completing the BDSP Pokedex, if it meant they didn't get exclusive, or near enough, shinies.

For Pokémon that can be obtained through other means, it's likely up to cutscene continuity, as the previous answer said. It'd be less of a hassle to just shiny-lock the Pokémon than decide when they should be determined shiny, as Pokémon like the starters, titans, etc appear in cutscenes before they're obtained. I don't think there's much of a reason for Gift Pokémon this doesn't apply to, beyond Game Freak deciding it to be this way.

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Making this a comment since it doesn't tie into the answer, but I disagree with the rest of the other answers points, so I'd rather leave it up to these two. There's a weird stigma around shiny hunting, and while it is funny to point and laugh at them in good fun, it's also lame to hate how people play a video game. Inherently, all forms of escapism are time wasters, and if I were a parent, I'd care more for if what my kid's playing is inappropriate or for how long than what they like doing in their games. Regardless, why would Game Freak be against people going out to look for a rare alternate form of creatures in their creature collecting game?
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Some Pokemon are shiny locked to prevent Hacked versions of the same on the GTS. For example, a Shiny Zekrom on the GTS was most certainly a hacked one, probably by using Pokegen or other such illegal tools/ methods. This way, people wouldn't get duped by offers that appeared legit.

Another reason is probably to prevent people from Soft-reseting hundreds and thousands of times to get an alternate coloured version of the Pokémon, quite possibly convincing parents that Pokemon was a bad game that wasted their children's time too much (maybe jot, because those patient enough to SR hundreds of times are generally old enough to know what they're doing, but still, a waste of time nonetheless).

Not gonna lie here, but the third probable reason is what I read on Reddit:
To maintain cutscene continuity. Basically, to ensure that the Pokemon looked same in every cut scene, which increased in frequency since Gen 5, which was also when they were first shiny locked.

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