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Such as Dhelmise in Alola, since it is only 1% in one place.(This does not count SOS exclusive Pokemon, and I'm talking about regular encounters, not Shaking/Bubbling/Dusty spots.) Thanks! Sorry if this is unanswerable/really long to answer. Also, if they have a remake game, find the rarest in all and specify which game.

Expert note: a video link is not an answer. A video is a source. Please read the rules before answering

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You're talking about pokemon in the wild, right? Not event exclusives, trade evolutions, or max raid encounters? Just pokemon that spawn in the wild?
I think every game has at least one area where something has a 1% encounter chance. Do you want a full list of those areas?
@ sumwun, he's asking for Pokemon which can be only be found in one place in the entire game with a very low chance (>5%), like Riolu in B2W2, which can be only found in Flocessy Ranch with a 5% chance
Yes. sumwun, I want to find the total percentage, so if something is found somewhere at 1%, but is also found somewhere else in that region with a higher chance, you'd find the average. So yeah, most of 'em should be like my example or GeniusGatik942's.
Also, yes Call me joey, that's why I have the wild pokemon tag.
Okay, just double checking.
Sinnoh:
**MUNCHLAX**, the only way to get **Munchlax** is to slather honey on trees
1. you need to slather the honey on the tree
2. you just have to wait A WHILE

You just hope that a Pokémon (**Munchlax**) comes down (from the tree) because it has a high chance of not being a Pokémon. If it isn't a Pokémon you need to slather honey again until a Pokemon comes even if it is a Pokémon it has a very low chance of being **Munchlax**. And there are several trees and only some of them have **Munchlax** in them and you can't search what trees have **Munchlax** because it is random...

Answer: **Munchlax** 100% the rarest Pokémon in Sinnoh

Source: **MandJTV** the youtube channel

Game(s): diamond, pearl and platinum
@scwkylil, that's a good partial answer, but if you can't provide a full answer, please post it as a comment, instead. The question asks for every region.
I'll answer this completely tonight, sorry, I thought there was a rule where if it requires a lot of data that would just be copied from another site or video, you can just post the link
Uh ok so I was cross checking my answer to a YouTube video, and was on sword and shield, for some reason the website kicked me out, made me login again and lost all my progress. I'm not answering anymore
For future answerers, use this video. Because you don't want sos/shaking spots, Kangaskhan and Bagon both appear at 1% in Wela Volcano Park and Route 3 respectively, and Dragonite for bw is a rippling spot so doesn't count
https://youtu.be/jz7iBWAU84c
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Well this video explains it all for you.


https://www.youtube.com/watch?v=85jnVBXbtc8
why is everyone answering this with a video?
That's quite a popular video, however, as we know, videos aren't answers. Links in general, really, aren't answers.

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Ok I remember almost everything he said in the video so I'm just gonna do this again.

No Feebas allowed for Gen 3 and 4 because if you know what tiles they are it's a 50% chance to find one, sooooo.

Red: Golduck, 1%, Seafoam Islands, 1F

Blue: Slowbro, 1%, Seafoam Islands, 1F

Yellow: Dodrio, 1%, Route 17

GSC: Dunsparce, 1%, Dark Cave, Violet City side

RSE has a tie:

Wailord, 1%, Route 129, Surfing
Magneton, 1%, New Mauville
Illumise, 1%, Route 117, Only in S
Volbeat, 1%, Route 117, Only in R and E

FRLG: Dragonair, 1%, Safari Zone, Fishing, Super Rod

DPPt: Munchlax, 1%, 4/21 Honey Trees, you know the deal.

HGSS: Dragonair, 3%, Dragon's Den, Fishing, Super Rod

BW: Cryoganal, 1%, Twist Mountain

B2: Medicham, Lombre, Granbull, Murkrow, 1%, Hidden Grottoes

W2: Hariyama, Lombre, Granbull, Murkrow, 1%, Hidden Grottoes

XY: Abomasnow, 1%, Route 17

ORAS: Ralts, 4%, Route 102, and Volbeat (OR) or Illumise, (AS) 4%, Route 117

SMUSUM: Kangaskhan, 1%, Wela Volcano Park, or Bagon, 1%, Route 3

LGPE: Non Static Legendary Birds, <1%, any Route, High catch combo

SwSh is a mess because of weather, Overworld encounters, hidden encounters, strong spawns, etc.

Sword: Deino, Hakamo-o, and Turtonator, 1%, Lake of Outrage, Raining, Thunder, and Intense Sun, respectively

Shield: Goomy, Sliggoo, Drampa, 1%, Lake of Outrage, Raining, Thunder, and Thunder respectively

Source
Source

Thank you guys for dealing with my total BS on this thread and the other one.

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This is missing Surskit in RS, Illumise in S, Seedot in E, and Volbeat in RE.
Surskit and Seedot both appear in more than one location, and they can also swarm.

Volbeat and Illumise might fit into this category I need to do some checking
Thanks so much Gmax, check that, and then this'll be good but otherwise it'll be awesome.