PokéBase - Pokémon Q&A
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Deoxys Speed Form is the fastest pokmon ever created. If you want a really faqst pokemon that isnt a legendary, Ninjask is pretty good, in fact he is slightly faster.
Fastest Unova Pokemon : Agirudaa - http://pokemondb.net/pokedex/617
Fastest Hoenn Pokmon: Ninjask http://pokemondb.net/pokedex/ninjask
Fastest Sinnoh Pokemon: Crobat http://pokemondb.net/pokedex/crobat
Fastest Johto Pokmon: Electrode http://pokemondb.net/pokedex/electrode
Fastest Kanto Pokemon: Mewtwo http://pokemondb.net/pokedex/mewtwo


Hope this helps...

edited by
Electrode is in kanto
Crobat is from johto
Jolteon, Aerodactly and Crobat also have the same speed as Mewtwo.
1) Deoxys is faster than Ninjask
2) Crobat is Johto
3)Electrode is faster than Mewtwo