I put two Pokemon into the daycare to breed them, but now I can't get them back out. Every time I take a step a new egg is made, so by the time I collect the egg and walk back inside to get my Pokemon, she lady wont let me get them because she says her husband has another egg. What do I do?
Also, I'm playing on an emulator - DeSmuME
If you disregard the microscopic chance of actually getting an egg in that small period of time, on multiple occasions, then this is a glitch. Emulators are prone to glitches that the regular games wouldn't have.