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Like how Quilava, Typhlosion and Entei are all volcano Pokemon(read on their pages)

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Torterra and Groudon are both continent Pokemon, Dragonite and Salamence are both dragon Pokemon, Sunflora and Espeon are both sun Pokemon, Bellossom  and Bellsprout are both flower Pokemon, but that's all I can think of right now.

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Best answer

(Updated by Pokemaster for Gen 9)

Quick stat: the most common species categories are Paradox (16 Pokemon), Dragon (8), Mouse (8), Fox (7) Mushroom (6), and Poison Pin (6).

Pokemon from different evolution lines:

Seed Pokemon:
Bulbasaur/Ivysaur/Venusaur
Sunkern

Flame Pokemon:
Charmeleon/Charizard
Flareon
Moltres
Infernape

Shellfish Pokemon:
Blastoise
Kabuto/Kabutops

Worm Pokemon:
Caterpie
Wurmple
Snom

Cocoon Pokemon:
Metapod/Kakuna
Silcoon/Cascoon

Butterfly Pokemon:
Butterfree
Beautifly

Tiny Bird Pokemon:
Pidgey
Spearow
Natu
Rookidee

Mouse Pokemon:
Rattata/Raticate
Pikachu/Raichu
Sandshrew/Sandslash
Pawmi/Pawmo

Poison Pin Pokemon:
Nidoran♀/Nidorina
Nidoran♂/Nidorino
Poipole/Naganadel

Drill Pokemon:
Nidoqueen
Nidoking
Rhydon/Rhyperior

Fairy Pokemon:
Clefairy/Clefable
Snubbull/Granbull

Fox Pokemon:
Vulpix/Ninetales
Fennekin/Braixen/Delphox
Nickit/Thievul

Balloon Pokemon:
Igglybuff/Jigglypuff/Wigglytuff
Qwilfish
Drifloon

Bat Pokemon:
Zubat/Golbat/Crobat
Woobat

Flower Pokemon:
Vileplume/Bellossom
Bellsprout

Mushroom Pokemon:
Paras/Parasect
Shroomish/Breloom
Foongus/Amoonguss

Poison Moth Pokemon:
Venomoth
Dustox

Mole Pokemon:
Diglett/Dugtrio
Drilbur

Puppy Pokemon:
Growlithe
Lillipup
Rockruff
Yamper/Fidough

Scout Pokemon:
Hisuian Growlithe
Sentret
Patrat

Tadpole Pokemon:
Poliwag/Poliwhirl/Poliwrath
Tympole

Sea Lion Pokemon:
Seel/Dewgong
Popplio

Bivalve Pokemon:
Shellder/Cloyster
Clamperl

Pincer Pokemon:
Kingler
Scizor

Egg Pokemon:
Exeggcute
Chansey

Dragon Pokemon:
Horsea/Seadra/Kingdra
Dratini/Dragonair/Dragonite
Salamence
Goodra

Star Shape Pokemon:
Staryu
Cleffa

Dancing
Galarian Mr. Mime
Oricorio

Electric Pokemon:
Elekid/Electabuzz
Zapdos

Stag Beetle Pokemon:
Pinsir
Vikavolt

Fish Pokemon:
Magikarp
Feebas

Lightning Pokemon:
Jolteon
Electrike

Fossil Pokemon:
Aerodactyl
Dracozolt
Arctozolt
Dracovish
Arctovish

Cruel:
Galarian Articuno
Liepard

Volcano Pokemon:
Quilava/Typhlosion
Entei

Light Pokemon:
Lanturn
Ampharos

Happiness Pokemon:
Togetic
Blissey

Mystic Pokemon:
Xatu
Flygon

Sun Pokemon:
Sunflora
Espeon
Volcarona

Darkness Pokemon:
Murkrow
Sableye

Royal Pokemon:
Slowking
Pyroar

Bagworm Pokemon:
Pineco/Forretress
Burmy/Wormadam

Armor Pokemon:
Donphan
Tyranitar

Bite Pokemon:
Poochyena/Mightyena
Drednaw

Wily Pokemon:
Nuzleaf
Impidimp

Water Bird Pokemon:
Pelipper
Ducklett

Emotion Pokemon:
Kirlia
Mesprit
Indeedee

Ninja Pokemon:
Ninjask
Greninja

Cheering Pokemon:
Plusle
Minun

Firefly Pokemon:
Volbeat
Illumise

Brutal Pokemon:
Sharpedo
Hydreigon

Coal Pokemon:
Torkoal
Rolycoly/Carkol/Coalossal

Manipulate Pokemon:
Grumpig
Gothorita

Vibration Pokemon:
Vibrava
Palpitoad/Seismitoad

Cactus Pokemon:
Cacnea
Maractus

Meteorite Pokemon:
Lunatone
Solrock

Fruit Pokemon:
Tropius
Bounsweet/Steenee/Tsareena

Iceberg Pokemon:
Regice
Avalugg

Eon Pokemon:
Latias
Latios

Continent Pokemon:
Groudon
Torterra

Chimp Pokemon:
Chimchar
Grookey

Playful Pokemon:
Monferno
Pancham

Penguin Pokemon:
Piplup/Prinplup
Eiscue

Rabbit Pokemon:
Buneary/Lopunny
Scorbunny/Raboot

Cave Pokemon:
Gabite
Druddigon

Thunderbolt Pokemon:
Electivire
Zebstrika

Fresh Snow Pokemon:
Glaceon
Vanillite

Devious Pokemon:
Purrloin
Morgrem

Ember Pokemon:
Simisear
Fletchinder

Drowsing Pokemon:
Musharna
Komala

Ore Pokemon:
Boldore
Glimmet/Glimmora

Flowering Pokemon:
Lilligant
Gossifleur

Hostile Pokemon:
Basculin
Zweilous

Snail Pokemon:
Shelmet
Hisuian Sliggoo

Trap Pokemon:
Stunfisk
Spidops

Mount Pokemon:
Skiddo/Gogoat
Cyclizar

Jewel Pokemon:
Carbink
Diancie

Larva Pokemon:
Grubbin
Blipbug

Land Spirit Pokemon:
Tapu Koko
Tapu Lele
Tapu Bulu
Tapu Fini

Paradox:
Great Tusk
Scream Tail
Brute Bonnet
Flutter Mane
Slither Wing
Sandy Shocks
Iron Treads
Iron Bundle
Iron Hands
Iron Jugulis
Iron Moth
Iron Thorns
Roaring Moon
Iron Valiant
Koraidon
Miraidon

Ruinous:
Wo-Chien
Chien-Pao
Ting-Lu
Chi-Yu

Pokemon from the same evolution line:

Bird Pokemon: Pidgeotto/Pidgeot
Weed Pokemon: Oddish/Gloom
Duck Pokemon: Psyduck/Golduck
Pig Monkey Pokemon: Mankey/Primeape
Psi Pokemon: Abra/Kadabra/Alakazam
Superpower Pokemon: Machop/Machoke/Machamp
Flycatcher Pokemon: Weepinbell/Victreebel
Jellyfish Pokemon: Tentacool/Tentacruel
Rock Pokemon: Geodude/Graveler
Fire Horse Pokemon: Ponyta/Rapidash
Unique Horn: Galarian Ponyta/Rapidash
Magnet Pokemon: Magnemite/Magneton
Wild Duck: Farfetch'd/Sirfetch'd
Sludge Pokemon: Grimer/Muk
Gas Pokemon: Gastly/Haunter
Hypnosis Pokemon: Drowzee/Hypno
Ball Pokemon: Voltorb/Electrode
Sphere Pokemon: Hisuian Voltorb/Electrode
Licking Pokemon: Lickitung/Lickilicky
Poison Gas Pokemon: Koffing/Weezing
Vine Pokemon: Tangela/Tangrowth
Goldfish Pokemon: Goldeen/Seaking
Virtual Pokemon: Porygon/Porygon2/Porygon-Z
Spiral Pokemon: Omanyte/Omastar
Leaf Pokemon: Chikorita/Bayleef
Big Jaw Pokemon: Totodile/Croconaw/Feraligatr
Owl Pokemon: Hoothoot/Noctowl
Five Star Pokemon: Ledyba/Ledian
Wool Pokemon: Mareep/Flaaffy
Cottonweed Pokemon: Hoppip/Skiploom/Jumpluff
Long Tail Pokemon: Aipom/Ambipom
Water Fish Pokemon: Wooper/Quagsire
Long Neck Pokemon: Girafarig/Farigiraf
Land Snake Pokemon: Dunsparce/Dudunsparce
Sharp Claw Pokemon: Sneasel/Weavile
Lava Pokemon: Slugma/Magcargo
Coral Pokemon: Galarian Corsola/Cursola
Jet Pokemon: Remoraid/Octillery
Kite Pokemon: Mantine/Mantyke
Dark Pokemon: Houndour/Houndoom
Big Horn Pokemon: Stantler/Wyrdeer
Wood Gecko Pokemon: Treecko/Grovyle
Mud Fish Pokemon: Mudkip/Marshtomp/Swampert
Compass Pokemon: Nosepass/Probopass
Iron Armor Pokemon: Aron/Lairon/Aggron
Meditate Pokemon: Meditite/Medicham
Whiskers Pokemon: Barboach/Whiscash
Clay Doll Pokemon: Baltoy/Claydol
Starling Pokemon: Starly/Staravia
Cricket Pokemon: Kricketot/Kricketune
Head Butt Pokemon: Cranidos/Rampardos
Shield Pokemon: Shieldon/Bastiodon
Sea Weasel Pokemon: Buizel/Floatzel
Sea Slug Pokemon: Shellos/Gastrodon
Skunk Pokemon: Stunky/Skuntank
Toxic Mouth Pokemon: Croagunk/Toxicroak
Frost Tree Pokemon: Snover/Abomasnow
Grass Snake Pokemon: Snivy/Servine
Fire Pig Pokemon: Tepig/Pignite
Muscular Pokemon: Timburr/Gurdurr/Conkeldurr
Desert Croc Pokemon: Sandile/Krokorok
Zen Charm Pokemon: Darumaka/Zen Mode Darmanitan
Prototurtle Pokemon: Tirtouga/Carracosta
First Bird Pokemon: Archen/Archeops
Season Pokemon: Deerling /Sawsbuck
Floating Pokemon: Frillish/Jellicent
Gear Pokemon: Klink/Klang/Klinklang
EleFish Pokemon: Tynamo/Eelektrik/Eelektross
Cerebral Pokemon: Elgyem/Beheeyem
Axe Jaw Pokemon: Fraxure/Haxorus
Martial Arts Pokemon: Mienfoo/Mienshao
Automaton Pokemon: Golett/Golurk
Spiny Armor Pokemon: Quilladin/Chesnaught
Bubble Frog Pokemon: Froakie/Frogadier
Digging Pokemon: Bunnelby/Diggersby
Scatterdust Pokemon: Scatterbug/Spewpa
Single Bloom Pokemon: Flabébé/Floette
Sword Pokemon: Honedge/Doublade
Mock Kelp Pokemon: Skrelp/Dragalge
Generator Pokemon: Helioptile/Heliolisk
Tundra Pokemon: Amaura/Aurorus
Soft Tissue Pokemon: Goomy/Sliggoo
Pumpkin Pokemon: Pumpkaboo/Gourgeist
Sound Wave Pokemon: Noibat/Noivern
Fire Cat Pokemon: Litten/Torracat
Bee Fly Pokemon: Cutiefly/Ribombee
Brutal Star Pokemon: Mareanie/Toxapex
Water Bubble Pokemon: Dewpider/Araquanid
Illuminating Pokemon: Morelull/Shiinotic
Toxic Lizard Pokemon: Salandit/Salazzle
Synthetic Pokemon: Type: Null/Silvally
Scaly Pokemon: Jangmo-o/Hakamo-o/Kommo-o
Hex Nut Pokemon: Meltan/Melmetal
Water Lizard Pokemon: Sobble/Drizzile
Raven Pokemon: Corvisquire/Corviknight
Sheep Pokemon: Wooloo/Dubwool
Dog Pokemon: Boltund/Dachsbun
Sand Snake Pokemon: Silicobra/Sandaconda
Radiator Pokemon: Sizzlipede/Centiskorch
Tantrum Pokemon: Clobbopus/Grapploct
Black Tea Pokemon: Sinistea/Polteageist
Cream Pokemon: Milcery/Alcremie
Copperderm Pokemon: Cufant/Copperajah
Warrior Pokemon: Zacian/Zamazenta
Wushu Pokemon: Kubfu/Urshifu
Grass Cat Pokemon: Sprigatito/Floragato
Fire Croc Pokemon: Fuecoco/Crocalor
Hog Pokemon: Lechonk/Oinkologne
Grasshopper Pokemon: Nymble/Lokix
Olive Pokemon: Smoliv/Dolliv/Arboliva
Rock Salt Pokemon: Nacli/Naclstack/Garganacl
Tumbleweed Pokemon: Bramblin/Brambleghast
Woodear Pokemon: Toedscool/Toedscruel
Spicy Pepper Pokemon: Capsakid/Scovillain
Rolling Pokemon: Rellor/Rabsca
Hammer Pokemon: Tinkatuff/Tinkaton
Garden Eel Pokemon: Wiglett/Wugtrio
Dolphin Pokemon: Finizen/Palafin
Ghost Dog Pokemon: Greavard/Houndstone
Terra Whale Pokemon: Cetoddle/Cetitan
Ice Fin Pokemon: Frigibax/Arctibax

Now I'm done
(If there is anything I missed, please tell me.)

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I'm not sure if you were meant to include Pokemon in the same evolution families, because those are very obvious.
Well some of them change species like Gible (Land Shark Pokémon) becomes Gabite (Cave Pokémon)
yeah, I removed those
FYI I just updated this based on data straight from our database. Added several missing ones from gen 7 and reformatted it a bit.
Updated for Gen 9 :-)